The Wizard in v5.22 has clearly received an update and some welcome new features.
Regarding the Homing and Travel > Axes Pairing and Paired Axes Homing…
Is this just an initial machine setup tool or should Auto Squaring be engaged?
The associated pdf manual is watermarked as a draft.
Are you using “our” version CNC12 or the one downloaded directly from Centroid? If you’re reading a manual that’s watermarked as a draft it sounds like you got that directly from Centroid
Yes, your version of cnc12.
There’s a link to the manual in the Wizard.
Ahh, that’s on the “advanced” side of the wizard. That link you found is to Centroid’s “stock” squaring setup. We don’t use that.
On servos we use hard stop homing for squaring, and on steppers we use our own special homing script that handles squaring for you. Those are on by default.
Did you have a particular need to go into that advanced menu for something that’s beyond the squaring we offer?
Gotcha.
Had to adjust a bunch of things considering the update seems akin to building from scratch… inputs, outputs, all machine settings, Corbin’s atc stuff, etc.
The MPU firmware gets updated when switching between a v5.18 and v.5.22 profile - this is expected, yes?
If you’re using one of our machines when you setup from scratch you shouldn’t need to do anything in the advanced side save for maybe configuring the bar for Corbin’s scripts. Just trying to save you a headache 
As far as the firmware update that always happens when you switch major versions.
Roger that.
Thanks Eric.